.. Methoden Der Bioinformatik documentation master file, created by
   sphinx-quickstart on Sat Oct 10 23:06:41 2015.
   You can adapt this file completely to your liking, but it should at least
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Methoden der Bioinformatik -- WS 2017/2018 [*]_
====================================================

.. note:: If you have a Windows Laptop (Windows < Windows 10) and want to run a linux system inside, the simplest way is to run a **Virtual Machine** using VirtualBox. You can check the `following site for informations <http://www.instructables.com/id/Introduction-38/>`_

.. note::  If you have a windows 10 laptop, this is even simpler: `check this website <https://msdn.microsoft.com/de-de/commandline/wsl/install_guide>`_





Schedule
""""""""

**Important notice : Lectures start c.t., practicals start s.t. !!**

=====  ============== ======================================================= ======== =================
Date   Topic          Type                                                    Location Time
=====  ============== ======================================================= ======== =================
19.10  Introduction   :download:`Lecture 1 : intro to Bioinfo                 BQ       10-12
                      <../documents/2017-10-19.Vorlesung.pdf>`
20.10  Bash intro     Practicals                                              IPMB     10-11.30/11.30-13
26.10  Bash (cont.)   Practicals                                              IPMB     10-11/11-12
27.10  Bash           Practicals                                              IPMB     10-11.30/11.30-13
02.11  Awk            Lecture/Practical                                       IPMB     10-11/11-12
03.11  Variablen      Practicals                                              IPMB     10-11.30/11.30-13
09.11  Lists          Practicals                                              IPMB     10-11/11-12
10.11  Loops/Tests    Practicals                                              IPMB     10-11.30/11.30-13
16.11  Reading files  Practicals                                              IPMB     10-11/11-12
17.11  Conclusion     Practicals                                              IPMB     10-11.30/11.30-13
=====  ============== ======================================================= ======== =================




Practicals
""""""""""
.. toctree::
   :maxdepth: 2

   bash1
   bash2
   python1
   python2

..
     Slides
     """"""

     * :download:`Vorlesung 1 : Einführung in die Bioinformatik <../documents/2017-10-17.Vorlesung.pdf>`
     * :download:`Vorlesung Bash <../documents/Vorlesung_Teil_Linux.pdf>`
     * :download:`Vorlesung Erste Befehle mit Python <../documents/Vorlesung_programming101.pdf>`


Links
"""""

* `Programming for biologists <http://www.programmingforbiologists.org/>`_
* `Python for biologists <http://www.pythonforbiologists.com/>`_


.. [*] Strongly inspired by the lectures of Denis Puthier, TAGC Marseille. Merci !